Transcript: lnc-IKZF1-3:1

Basic information

LNCipedia transcript ID: lnc-IKZF1-3:1 
LNCipedia gene ID: lnc-IKZF1-3
Ensembl Gene ID: ENSG00000229403
Ensembl Transcript ID: ENST00000414409
Location (hg19): chr7:51681947-51698566
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 588 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013010; ENST00000414409; ENST00000414409.1; RP4-718N17.2-001; OTTHUMT00000342681.1; NONHSAT120600
Alternative gene names: XLOC_006097; linc-POM121L12-5; ENSG00000229403; RP4-718N17.2; ENSG00000229403.1; OTTHUMG00000155998.1; AC005999.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -262.1302 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IKZF1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IKZF1-1:1
3.1 lnc-IKZF1-3:1
4.0 lnc-IKZF1-3:1
4.1 lnc-IKZF1-3:1
5.0 lnc-IKZF1-3:1
5.1 lnc-CCT6A-78:2
5.2 lnc-IKZF1-3:1