Transcript: lnc-IKZF2-3:1

Basic information

LNCipedia transcript ID: lnc-IKZF2-3:1 
LNCipedia gene ID: lnc-IKZF2-3
Location (hg19): chr2:214131488-214148967
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 676 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004571; NONHSAT076711
Alternative gene names: XLOC_002478; linc-IKZF2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.6502 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IKZF2-3:1 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IKZF2-3:1
3.1 lnc-IKZF2-3:1
4.0 lnc-IKZF2-3:1
4.1 lnc-IKZF2-3:1
5.0 lnc-IKZF2-3:1
5.1 lnc-FN1-3:8
5.2 lnc-IKZF2-3:1