Transcript: lnc-IKZF2-3:2

Basic information

LNCipedia transcript ID: lnc-IKZF2-3:2 
LNCipedia gene ID: lnc-IKZF2-3
Ensembl Gene ID: ENSG00000196096
Ensembl Transcript ID: ENST00000360083
Location (hg19): chr2:214141276-214148929
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1727 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000360083; TCONS_00003491; ENST00000360083.3; AC079610.2-001; OTTHUMT00000337357.1
Alternative gene names: ENSG00000196096; XLOC_002478; linc-IKZF2-1; AC079610.2; ENSG00000196096.3; OTTHUMG00000154847.1; AC079610.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.6095 non-coding 
CPAT coding probability 10.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IKZF2-3:2 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IKZF2-3:2
3.1 lnc-IKZF2-3:2
4.0 lnc-IKZF2-3:2
4.1 lnc-IKZF2-3:2
5.0 lnc-IKZF2-3:2
5.1 lnc-FN1-3:14
5.2 lnc-IKZF2-3:2