Transcript: lnc-IKZF2-3:6

Basic information

LNCipedia transcript ID: lnc-IKZF2-3:6 
LNCipedia gene ID: lnc-IKZF2-3
Location (hg19): chr2:214139149-214140111
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1679 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_18260_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.3777 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IKZF2-3:6 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IKZF2-3:6
4.0 lnc-IKZF2-3:6
4.1 lnc-IKZF2-3:6
5.0 lnc-IKZF2-3:6
5.1 lnc-FN1-3:18
5.2 lnc-IKZF2-3:6