Transcript: lnc-IL17B-2:2

Basic information

LNCipedia transcript ID: lnc-IL17B-2:2 
LNCipedia gene ID: lnc-IL17B-2
Location (hg19): chr5:148872949-148880816
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3088 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000412431.2; CTB-89H12.4-201; NONHSAT104511
Alternative gene names: ENSG00000230551.3; CTB-89H12.4; OTTHUMG00000163462.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.6866 non-coding 
CPAT coding probability 2.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL17B-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IL17B-2:2
4.0 lnc-IL17B-2:2
4.1 lnc-IL17B-2:2
5.0 lnc-IL17B-2:2
5.1 lnc-FAXDC2-73:2
5.2 lnc-IL17B-2:2