Transcript: lnc-IL17RA-36:23

Basic information

LNCipedia transcript ID: lnc-IL17RA-36:23 
LNCipedia gene ID: lnc-IL17RA-36
Ensembl Gene ID: ENSG00000283633
Ensembl Transcript ID: ENST00000592107
Location (hg19): chr22:17082838-17096001
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1019 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000592107.1; ENST00000592107.5
Alternative gene names: ENSG00000100181.17; TPTEP1; ENSG00000100181.21; ENSG00000283633.1; AC005301.9; AP000547.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 113.0286 coding 
CPAT coding probability 45.79% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IL17RA-36:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IL17RA-4:12
4.0 lnc-IL17RA-4:12
4.1 lnc-IL17RA-4:12
5.0 lnc-IL17RA-4:12
5.1 lnc-SERPIND1-90:23
5.2 lnc-IL17RA-36:23