Transcript: lnc-IL17RA-36:32

Basic information

LNCipedia transcript ID: lnc-IL17RA-36:32 
LNCipedia gene ID: lnc-IL17RA-36
Location (hg19): chr22:17129698-17131830
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2133 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000545818; ENST00000545818.1; TPTEP1-201; NONHSAT083147
Alternative gene names: ENSG00000100181; AC005301.5; ENSG00000100181.15; TPTEP1; OTTHUMG00000141300.3; ENSG00000100181.17


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 53.4105 non-coding 
CPAT coding probability 28.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IL17RA-36:32 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IL17RA-4:4
3.1 lnc-IL17RA-4:5
4.0 lnc-IL17RA-4:5
4.1 lnc-IL17RA-4:5
5.0 lnc-IL17RA-4:5
5.1 lnc-SERPIND1-90:32
5.2 lnc-IL17RA-36:32