Transcript: lnc-IL31RA-4:6

Basic information

LNCipedia transcript ID: lnc-IL31RA-4:6 
LNCipedia gene ID: lnc-IL31RA-4
Ensembl Gene ID: ENSG00000249236
Ensembl Transcript ID: ENST00000511861
Location (hg19): chr5:55354877-55363199
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 384 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009403; ENST00000511861; ENST00000511861.1; CTD-2227I18.1-001; OTTHUMT00000368506.1; NONHSAT101527
Alternative gene names: XLOC_004392; linc-MAP3K1-3; ENSG00000249236; CTD-2227I18.1; ENSG00000249236.1; OTTHUMG00000162302.1; AC008892.1; ENSG00000249236.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.2765 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL31RA-4:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTD-2031P19.3.1-1:1
3.1 lnc-CTD-2031P19.3.1-2:1
4.0 lnc-CTD-2031P19.3.1-2:1
4.1 lnc-CTD-2031P19.3.1-2:1
5.0 lnc-CTD-2031P19.3.1-2:1
5.1 lnc-GPBP1-23:17
5.2 lnc-IL31RA-4:6