Transcript: lnc-IL5RA-4:1

Basic information

LNCipedia transcript ID: lnc-IL5RA-4:1 
LNCipedia gene ID: lnc-IL5RA-4
Ensembl Gene ID: ENSG00000225044
Ensembl Transcript ID: ENST00000418972
Location (hg19): chr3:2004065-2029154
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 357 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005723; ENST00000418972; ENST00000418972.1; RP11-204C23.1-001; OTTHUMT00000343337.1; NONHSAT087585
Alternative gene names: XLOC_003016; linc-IQCG-4; ENSG00000225044; RP11-204C23.1; ENSG00000225044.1; OTTHUMG00000156184.1; AC018814.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.3441 non-coding 
CPAT coding probability 0.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL5RA-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IL5RA-3:1
3.1 lnc-IL5RA-4:1
4.0 lnc-IL5RA-4:1
4.1 lnc-IL5RA-4:1
5.0 lnc-IL5RA-4:1
5.1 lnc-PRRT3-58:1
5.2 lnc-IL5RA-4:1