Transcript: lnc-IL6-3:8

Basic information

LNCipedia transcript ID: lnc-IL6-3:8 
LNCipedia gene ID: lnc-IL6-3
Ensembl Gene ID: ENSG00000232949
Ensembl Transcript ID: ENST00000439823
Location (hg19): chr7:22629324-22631241
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 557 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00012969; ENST00000439823; ENST00000439823.1; AC002480.4-001; OTTHUMT00000326622.1
Alternative gene names: XLOC_006009; linc-IL6-1; ENSG00000232949; AC002480.4; ENSG00000232949.1; OTTHUMG00000152531.1; AC002480.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -214.7295 non-coding 
CPAT coding probability 1.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IL6-3:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IL6-3:8
3.1 lnc-IL6-3:8
4.0 lnc-IL6-3:8
4.1 lnc-IL6-3:8
5.0 lnc-IL6-3:8
5.1 lnc-SNX10-76:25
5.2 lnc-IL6-3:8