Transcript: lnc-IMPACT-1:2

Basic information

LNCipedia transcript ID: lnc-IMPACT-1:2 
LNCipedia gene ID: lnc-IMPACT-1
Ensembl Gene ID: ENSG00000273321
Ensembl Transcript ID: ENST00000608010
Location (hg19): chr18:21982117-21982678
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608010.1
Alternative gene names: ENSG00000273321.1; RP11-621L6.3; AC023983.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.6343 non-coding 
CPAT coding probability 9.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IMPACT-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IMPACT-1:2
4.0 lnc-IMPACT-1:2
4.1 lnc-IMPACT-1:2
5.0 lnc-IMPACT-1:2
5.1 lnc-RIOK3-26:3
5.2 lnc-IMPACT-1:2