Transcript: lnc-INAVA-1:9

Basic information

LNCipedia transcript ID: lnc-INAVA-1:9 
LNCipedia gene ID: lnc-INAVA-1
Ensembl Gene ID: ENSG00000229191
Ensembl Transcript ID: ENST00000458003
Location (hg19): chr1:200993089-200997920
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3496 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000458003; ENST00000458003.1; RP11-168O16.1-001; OTTHUMT00000087051.1; NONHSAT008720
Alternative gene names: ENSG00000229191; RP11-168O16.1; ENSG00000229191.1; OTTHUMG00000035785.1; AL358473.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.4091 non-coding 
CPAT coding probability 1.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-INAVA-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf106-1:2
3.1 lnc-C1orf106-1:2
4.0 lnc-C1orf106-1:2
4.1 lnc-C1orf106-1:2
5.0 lnc-C1orf106-1:2
5.1 lnc-ADORA1-63:10
5.2 lnc-INAVA-1:9