Transcript: lnc-INTS1-1:1

Basic information

LNCipedia transcript ID: lnc-INTS1-1:1 
LNCipedia gene ID: lnc-INTS1-1
Ensembl Gene ID: ENSG00000231927
Ensembl Transcript ID: ENST00000416100
Location (hg19): chr7:1548291-1549063
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 242 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013116; ENST00000416100.1; AC102953.6-001; OTTHUMT00000323690.1; NONHSAT118729
Alternative gene names: XLOC_006332; linc-INTS1; ENSG00000231927.1; AC102953.6; OTTHUMG00000151728.1; AC093734.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 2.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-INTS1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-INTS1-1:1
3.1 lnc-INTS1-1:1
4.0 lnc-INTS1-1:1
4.1 lnc-INTS1-1:1
5.0 lnc-INTS1-1:1
5.1 lnc-PRKAR1B-32:1
5.2 lnc-INTS1-1:1