Transcript: lnc-IQCM-2:3

Basic information

LNCipedia transcript ID: lnc-IQCM-2:3 
LNCipedia gene ID: lnc-IQCM-2
Location (hg19): chr4:150658766-150736966
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 499 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000510975; ENST00000510975.1; RP11-526A4.1-004; OTTHUMT00000364769.1; NONHSAT098723
Alternative gene names: ENSG00000234828; RP11-526A4.1; ENSG00000234828.3; OTTHUMG00000161394.1; ENSG00000234828.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.5368 non-coding 
CPAT coding probability 1.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IQCM-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LRBA-2:3
3.1 lnc-LRBA-2:3
4.0 lnc-LRBA-2:3
4.1 lnc-LRBA-2:3
5.0 lnc-LRBA-2:3
5.1 lnc-NR3C2-13:3
5.2 lnc-IQCM-2:3