Transcript: lnc-IRF2BP2-2:1

Basic information

LNCipedia transcript ID: lnc-IRF2BP2-2:1 
LNCipedia gene ID: lnc-IRF2BP2-2
Location (hg19): chr1:234844781-234848736
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 657 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00001880
Alternative gene names: XLOC_001263; linc-IRF2BP2-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.0538 non-coding 
CPAT coding probability 4.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRF2BP2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRF2BP2-2:1
3.1 lnc-IRF2BP2-2:1
4.0 lnc-IRF2BP2-2:1
4.1 lnc-IRF2BP2-2:1
5.0 lnc-IRF2BP2-2:1
5.1 lnc-SIPA1L2-34:10
5.2 lnc-IRF2BP2-2:1