Transcript: lnc-IRF8-5:1

Basic information

LNCipedia transcript ID: lnc-IRF8-5:1 
LNCipedia gene ID: lnc-IRF8-5
Location (hg19): chr16:86015356-86018329
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 474 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: NONHSAT144158; ENST00000599411.1
Alternative gene names: ENSG00000269667.1; RP11-542M13.2; AC092723.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -17.0346 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRF8-5:1 no no no no

Available literature

  1. Ding (2015), Genetics of RA susceptibility, what comes next?, RMD Open


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IRF8-5:1
4.0 lnc-IRF8-5:1
4.1 lnc-IRF8-5:1
5.0 lnc-IRF8-5:1
5.1 lnc-COX4I1-7:1
5.2 lnc-IRF8-5:1