Transcript: lnc-IRX4-2:1

Basic information

LNCipedia transcript ID: lnc-IRX4-2:1 
LNCipedia gene ID: lnc-IRX4-2
Location (hg19): chr5:1929007-1930577
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1297 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010246; NONHSAT100079
Alternative gene names: XLOC_004707; linc-IRX4-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 23.6231 non-coding 
CPAT coding probability 50.39% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IRX4-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRX4-2:1
3.1 lnc-IRX4-2:1
4.0 lnc-IRX4-2:1
4.1 lnc-IRX4-2:1
5.0 lnc-IRX4-2:1
5.1 lnc-IRX2-11:1
5.2 lnc-IRX4-2:1