Transcript: lnc-IRX4-4:2

Basic information

LNCipedia transcript ID: lnc-IRX4-4:2 
LNCipedia gene ID: lnc-IRX4-4
RefSeq ID: NR_104616
Location (hg19): chr5:2303834-2312315
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 444 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104616; NR_104616.1
Alternative gene names: LOC100506858


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -81.5169 non-coding 
CPAT coding probability 3.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRX4-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IRX4-4:2
4.0 lnc-IRX4-4:2
4.1 lnc-IRX4-4:2
5.0 lnc-IRX4-4:2
5.1 lnc-IRX2-4:7
5.2 lnc-IRX4-4:2