Transcript: lnc-IRX4-4:3

Basic information

LNCipedia transcript ID: lnc-IRX4-4:3 
LNCipedia gene ID: lnc-IRX4-4
Location (hg19): chr5:2303884-2312048
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 398 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT100094
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.7848 non-coding 
CPAT coding probability 3.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRX4-4:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IRX4-4:3
4.0 lnc-IRX4-4:3
4.1 lnc-IRX4-4:3
5.0 lnc-IRX4-4:3
5.1 lnc-IRX2-4:8
5.2 lnc-IRX4-4:3