Transcript: lnc-ISCU-1:2

Basic information

LNCipedia transcript ID: lnc-ISCU-1:2 
LNCipedia gene ID: lnc-ISCU-1
Ensembl Gene ID: ENSG00000257221
Ensembl Transcript ID: ENST00000547282
Location (hg19): chr12:109029625-109034693
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 303 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000547282.1; RP11-689B22.2-002; OTTHUMT00000403907.1
Alternative gene names: ENSG00000257221.1; RP11-689B22.2; OTTHUMG00000169412.1; ENSG00000257221.2; MIR4496; ENSG00000257221.3; AC007569.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.3257 non-coding 
CPAT coding probability 4.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ISCU-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ISCU-1:2
4.0 lnc-ISCU-1:2
4.1 lnc-ISCU-1:2
5.0 lnc-ISCU-1:2
5.1 lnc-TCHP-27:5
5.2 lnc-ISCU-1:2