Transcript: lnc-ISX-11:1

Basic information

LNCipedia transcript ID: lnc-ISX-11:1 
LNCipedia gene ID: lnc-ISX-11
Ensembl Gene ID: ENSG00000280356
Ensembl Transcript ID: ENST00000624442
Location (hg19): chr22:35037171-35047854
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 10684 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000624442.1
Alternative gene names: ENSG00000280356.1; RP1-101G11.3; AL021877.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -0.9916 non-coding 
CPAT coding probability 63.71% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ISX-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ISX-11:1
4.1 lnc-ISX-11:1
5.0 lnc-ISX-11:1
5.1 lnc-MCM5-33:1
5.2 lnc-ISX-11:1