Transcript: lnc-ITGA2-4:3

Basic information

LNCipedia transcript ID: lnc-ITGA2-4:3 
LNCipedia gene ID: lnc-ITGA2-4
Location (hg19): chr5:52251187-52255037
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3851 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT101419
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -139.6706 non-coding 
CPAT coding probability 3.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGA2-4:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITGA2-4:2
4.0 lnc-ITGA1-4:2
4.1 lnc-ITGA1-4:2
5.0 lnc-ITGA1-4:2
5.1 lnc-GPBP1-51:2
5.2 lnc-ITGA2-4:3