Transcript: lnc-ITGA6-1:8

Basic information

LNCipedia transcript ID: lnc-ITGA6-1:8 
LNCipedia gene ID: lnc-ITGA6-1
Location (hg19): chr2:173117101-173145603
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 400 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003940; NONHSAT075494
Alternative gene names: XLOC_001756; linc-ITGA6-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -352.5665 non-coding 
CPAT coding probability 6.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGA6-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITGA6-2:1
3.1 lnc-ITGA6-2:1
4.0 lnc-ITGA6-1:8
4.1 lnc-ITGA6-1:8
5.0 lnc-ITGA6-1:8
5.1 lnc-UBR3-35:3
5.2 lnc-ITGA6-1:8