Transcript: lnc-ITGA9-2:6

Basic information

LNCipedia transcript ID: lnc-ITGA9-2:6 
LNCipedia gene ID: lnc-ITGA9-2
Ensembl Gene ID: ENSG00000198590
Ensembl Transcript ID: ENST00000332506
Location (hg19): chr3:37440653-37476988
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1845 bp
Exons: 7
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000332506.7
Alternative gene names: ENSG00000198590.11; C3orf35


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.7909 non-coding 
CPAT coding probability 2.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGA9-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C3orf35-1:6
4.1 lnc-C3orf35-1:6
5.0 lnc-C3orf35-1:6
5.1 lnc-CNOT10-46:6
5.2 lnc-ITGA9-2:6