Transcript: lnc-ITGAX-5:1

Basic information

LNCipedia transcript ID: lnc-ITGAX-5:1 
LNCipedia gene ID: lnc-ITGAX-5
Location (hg19): chr16:31398262-31399205
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 944 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000027120.1|ENCT00000158352.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.3605 non-coding 
CPAT coding probability 0.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGAX-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ITGAX-5:1
5.0 lnc-ITGAX-5:1
5.1 lnc-ZNF646-30:1
5.2 lnc-ITGAX-5:1