Transcript: lnc-ITGB1-1:2

Basic information

LNCipedia transcript ID: lnc-ITGB1-1:2 
LNCipedia gene ID: lnc-ITGB1-1
Ensembl Gene ID: ENSG00000273038
Ensembl Transcript ID: ENST00000609742
Location (hg19): chr10:33176183-33178239
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2057 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609742.2
Alternative gene names: ENSG00000273038.2; RP11-479G22.8; AL365203.3; AL365203.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -2.0085 non-coding 
CPAT coding probability 55.05% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ITGB1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ITGB1-1:2
4.1 lnc-ITGB1-1:2
5.0 lnc-ITGB1-1:2
5.1 lnc-CUL2-25:2
5.2 lnc-ITGB1-1:2