Transcript: lnc-ITGB8-2:2

Basic information

LNCipedia transcript ID: lnc-ITGB8-2:2 
LNCipedia gene ID: lnc-ITGB8-2
Ensembl Gene ID: ENSG00000233834
Ensembl Transcript ID: ENST00000430859
Location (hg19): chr7:20257209-20261315
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 740 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430859; ENST00000430859.1; AC005083.1-002; OTTHUMT00000326479.1
Alternative gene names: ENSG00000233834; AC005083.1; ENSG00000233834.2; OTTHUMG00000152503.1; ENSG00000233834.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -267.7939 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGB8-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITGB8-2:2
3.1 lnc-ITGB8-2:2
4.0 lnc-ITGB8-2:2
4.1 lnc-ITGB8-2:2
5.0 lnc-ITGB8-2:2
5.1 lnc-AHR-34:13
5.2 lnc-ITGB8-2:2