Transcript: lnc-ITM2C-1:4

Basic information

LNCipedia transcript ID: lnc-ITM2C-1:4 
LNCipedia gene ID: lnc-ITM2C-1
Ensembl Gene ID: ENSG00000232520
Ensembl Transcript ID: ENST00000415628
Location (hg19): chr2:231751261-231761806
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1765 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003123; ENST00000415628.1; AC012507.3-001; OTTHUMT00000332598.1; NONHSAT077309
Alternative gene names: XLOC_001897; linc-SPATA3; ENSG00000232520.1; AC012507.3; OTTHUMG00000153828.1; AC012507.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.1426 non-coding 
CPAT coding probability 69.46% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ITM2C-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITM2C-1:3
3.1 lnc-ITM2C-1:4
4.0 lnc-ITM2C-1:4
4.1 lnc-ITM2C-1:4
5.0 lnc-ITM2C-1:4
5.1 lnc-ARMC9-10:7
5.2 lnc-ITM2C-1:4