Transcript: lnc-ITPR2-5:1

Basic information

LNCipedia transcript ID: lnc-ITPR2-5:1 
LNCipedia gene ID: lnc-ITPR2-5
Ensembl Gene ID: ENSG00000278095
Ensembl Transcript ID: ENST00000621404
Location (hg19): chr12:26426262-26426833
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 572 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621404.1
Alternative gene names: ENSG00000278095.1; RP11-283G6.6; AC022509.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -47.65 non-coding 
CPAT coding probability 2.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITPR2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-ITPR2-5:1
4.1 lnc-ITPR2-5:1
5.0 lnc-ITPR2-5:1
5.1 lnc-WBP11-89:1
5.2 lnc-ITPR2-5:1