Transcript: lnc-ITPRIP-2:1

Basic information

LNCipedia transcript ID: lnc-ITPRIP-2:1 
LNCipedia gene ID: lnc-ITPRIP-2
Ensembl Gene ID: ENSG00000225768
Ensembl Transcript ID: ENST00000447860
Location (hg19): chr10:106234697-106240032
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1013 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00018037; ENST00000447860; ENST00000447860.1; RP11-127O4.3-001; OTTHUMT00000050218.1; NONHSAT016237
Alternative gene names: XLOC_008938; linc-ITPRIP-2; ENSG00000225768; RP11-127O4.3; ENSG00000225768.1; OTTHUMG00000019008.1; AL161646.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.7991 non-coding 
CPAT coding probability 2.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITPRIP-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITPRIP-2:1
3.1 lnc-ITPRIP-2:1
4.0 lnc-ITPRIP-2:1
4.1 lnc-ITPRIP-2:1
5.0 lnc-ITPRIP-2:1
5.1 lnc-CPN1-113:3
5.2 lnc-ITPRIP-2:1