Transcript: lnc-IZUMO1R-1:2

Basic information

LNCipedia transcript ID: lnc-IZUMO1R-1:2 
LNCipedia gene ID: lnc-IZUMO1R-1
Ensembl Gene ID: ENSG00000250519
Ensembl Transcript ID: ENST00000515097
Location (hg19): chr11:93971316-94012372
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 570 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515097; ENST00000515097.2; RP11-680H20.2-002; OTTHUMT00000396123.1; NONHSAT023713
Alternative gene names: ENSG00000250519; RP11-680H20.2; ENSG00000250519.2; OTTHUMG00000167754.2; ENSG00000250519.6; AP002784.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.258 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IZUMO1R-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOLR4-1:2
3.1 lnc-FOLR4-1:2
4.0 lnc-FOLR4-1:2
4.1 lnc-FOLR4-1:2
5.0 lnc-FOLR4-1:2
5.1 lnc-TRIM49C-32:2
5.2 lnc-IZUMO1R-1:2