Transcript: lnc-JADE1-1:3

Basic information

LNCipedia transcript ID: lnc-JADE1-1:3 
LNCipedia gene ID: lnc-JADE1-1
Location (hg19): chr4:129575030-129581852
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 324 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00008252; NONHSAT098283
Alternative gene names: XLOC_003686; linc-PHF17-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.3388 non-coding 
CPAT coding probability 11.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JADE1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHF17-1:1
3.1 lnc-PHF17-1:1
4.0 lnc-PHF17-1:1
4.1 lnc-PHF17-1:1
5.0 lnc-PHF17-1:1
5.1 lnc-ABHD18-8:3
5.2 lnc-JADE1-1:3