Transcript: lnc-JAG1-3:2

Basic information

LNCipedia transcript ID: lnc-JAG1-3:2 
LNCipedia gene ID: lnc-JAG1-3
Ensembl Gene ID: ENSG00000230990
Ensembl Transcript ID: ENST00000412405
Location (hg19): chr20:11246764-11249483
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 414 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412405; ENST00000412405.1; RP4-734C18.1-001; OTTHUMT00000078014.1; NONHSAT078629
Alternative gene names: ENSG00000230990; RP4-734C18.1; ENSG00000230990.1; OTTHUMG00000031883.1; AL049649.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -172.7988 non-coding 
CPAT coding probability 1.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JAG1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JAG1-2:2
3.1 lnc-JAG1-3:2
4.0 lnc-JAG1-3:2
4.1 lnc-JAG1-3:2
5.0 lnc-JAG1-3:2
5.1 lnc-JAG1-3:2
5.2 lnc-JAG1-3:2