Transcript: lnc-JAM3-3:19

Basic information

LNCipedia transcript ID: lnc-JAM3-3:19 
LNCipedia gene ID: lnc-JAM3-3
Location (hg19): chr11:133907134-133918269
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 8204 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000204241.3|MICT00000070843.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -59.34 non-coding 
CPAT coding probability 86.59% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-JAM3-3:19 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-JAM3-3:19
5.0 lnc-JAM3-3:19
5.1 lnc-JAM3-3:19
5.2 lnc-JAM3-3:19