Transcript: lnc-JAM3-3:2

Basic information

LNCipedia transcript ID: lnc-JAM3-3:2 
LNCipedia gene ID: lnc-JAM3-3
RefSeq ID: NR_027276
Location (hg19): chr11:133902167-133911236
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2299 bp
Exons: 3
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00019080; NR_027276; NR_027276.1
Alternative gene names: XLOC_009341; linc-JAM3-2; LOC100128239


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.7846 non-coding 
CPAT coding probability 36.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JAM3-3:2 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JAM3-2:2
3.1 lnc-JAM3-3:2
4.0 lnc-JAM3-3:2
4.1 lnc-JAM3-3:2
5.0 lnc-JAM3-3:2
5.1 lnc-JAM3-3:2
5.2 lnc-JAM3-3:2