Transcript: lnc-JAM3-3:8

Basic information

LNCipedia transcript ID: lnc-JAM3-3:8 
LNCipedia gene ID: lnc-JAM3-3
Location (hg19): chr11:133907616-133909782
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 324 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019543; NONHSAT025231
Alternative gene names: XLOC_009341; linc-JAM3-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 55.62% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-JAM3-3:8 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JAM3-2:8
3.1 lnc-JAM3-3:8
4.0 lnc-JAM3-3:8
4.1 lnc-JAM3-3:8
5.0 lnc-JAM3-3:8
5.1 lnc-JAM3-3:8
5.2 lnc-JAM3-3:8