Transcript: lnc-JMJD1C-1:2

Basic information

LNCipedia transcript ID: lnc-JMJD1C-1:2 
LNCipedia gene ID: lnc-JMJD1C-1
Ensembl Gene ID: ENSG00000224301
Ensembl Transcript ID: ENST00000433019
Location (hg19): chr10:64883698-64885297
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 505 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017988; ENST00000433019.1; RP11-144G16.1-001; OTTHUMT00000048248.1; NONHSAT013592
Alternative gene names: XLOC_008835; linc-EGR2; ENSG00000224301.1; RP11-144G16.1; OTTHUMG00000018310.1; AL590502.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.5101 non-coding 
CPAT coding probability 1.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JMJD1C-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JMJD1C-1:2
3.1 lnc-JMJD1C-1:2
4.0 lnc-JMJD1C-1:2
4.1 lnc-JMJD1C-1:2
5.0 lnc-JMJD1C-1:2
5.1 lnc-C10orf105-89:2
5.2 lnc-JMJD1C-1:2