Transcript: lnc-JMJD7-PLA2G4B-11:5

Basic information

LNCipedia transcript ID: lnc-JMJD7-PLA2G4B-11:5 
LNCipedia gene ID: lnc-JMJD7-PLA2G4B-11
Location (hg19): chr15:42265997-42273657
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 316 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT041989; FPKM1_group_10061_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.2342 non-coding 
CPAT coding probability 14.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JMJD7-PLA2G4B-11:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JMJD7-PLA2G4B-4:3
4.0 PLA2G4E-AS1:2
4.1 PLA2G4E-AS1:2
5.0 PLA2G4E-AS1:2
5.1 lnc-TMEM62-152:5
5.2 lnc-JMJD7-PLA2G4B-11:5