Transcript: lnc-JMJD7-PLA2G4B-11:6

Basic information

LNCipedia transcript ID: lnc-JMJD7-PLA2G4B-11:6 
LNCipedia gene ID: lnc-JMJD7-PLA2G4B-11
Location (hg19): chr15:42265998-42273657
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 314 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023386; NONHSAT041990
Alternative gene names: XLOC_011228; linc-GANC-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -95.9994 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JMJD7-PLA2G4B-11:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JMJD7-PLA2G4B-1:2
3.1 lnc-JMJD7-PLA2G4B-4:2
4.0 PLA2G4E-AS1:3
4.1 PLA2G4E-AS1:3
5.0 PLA2G4E-AS1:3
5.1 lnc-TMEM62-152:6
5.2 lnc-JMJD7-PLA2G4B-11:6