Transcript: lnc-JOSD1-1:12

Basic information

LNCipedia transcript ID: lnc-JOSD1-1:12 
LNCipedia gene ID: lnc-JOSD1-1
Ensembl Gene ID: ENSG00000230912
Ensembl Transcript ID: ENST00000423346
Location (hg19): chr22:39062513-39064755
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 410 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000423346.1; RP3-508I15.10-001; OTTHUMT00000320844.1; NONHSAT086709
Alternative gene names: ENSG00000230912.1; RP3-508I15.10; OTTHUMG00000150992.1; AL021707.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.2436 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JOSD1-1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP1-199H16.5.1-1:1
4.0 lnc-RP1-199H16.5.1-1:1
4.1 lnc-JOSD1-1:12
5.0 lnc-JOSD1-1:12
5.1 lnc-DNAJB7-36:12
5.2 lnc-JOSD1-1:12