Transcript: lnc-JOSD1-1:4

Basic information

LNCipedia transcript ID: lnc-JOSD1-1:4 
LNCipedia gene ID: lnc-JOSD1-1
Location (hg19): chr22:39063867-39065832
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 604 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000422408.1; RP3-508I15.9-003; OTTHUMT00000321037.1; NONHSAT086711
Alternative gene names: ENSG00000228274.1; RP3-508I15.9; OTTHUMG00000150989.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.9236 non-coding 
CPAT coding probability 27.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JOSD1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JOSD1-1:4
4.0 lnc-JOSD1-1:4
4.1 lnc-JOSD1-1:4
5.0 lnc-JOSD1-1:4
5.1 lnc-DNAJB7-36:11
5.2 lnc-JOSD1-1:4