Transcript: lnc-JOSD1-1:6

Basic information

LNCipedia transcript ID: lnc-JOSD1-1:6 
LNCipedia gene ID: lnc-JOSD1-1
Ensembl Gene ID: ENSG00000228274
Ensembl Transcript ID: ENST00000422408
Location (hg19): chr22:39063867-39066308
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1080 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422408.2
Alternative gene names: ENSG00000228274.3; RP3-508I15.9; AL021707.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.9715 non-coding 
CPAT coding probability 27.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JOSD1-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JOSD1-1:6
4.0 lnc-JOSD1-1:6
4.1 lnc-JOSD1-1:6
5.0 lnc-JOSD1-1:6
5.1 lnc-DNAJB7-36:10
5.2 lnc-JOSD1-1:6