Transcript: lnc-JPH1-3:2

Basic information

LNCipedia transcript ID: lnc-JPH1-3:2 
LNCipedia gene ID: lnc-JPH1-3
Ensembl Gene ID: ENSG00000253706
Ensembl Transcript ID: ENST00000522914
Location (hg19): chr8:75757083-75779171
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 454 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000522914.1; RP11-758M4.4-003; OTTHUMT00000379169.1; NONHSAT127302
Alternative gene names: ENSG00000253706.1; RP11-758M4.4; OTTHUMG00000164543.1; ENSG00000253706.5; AC011632.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.8531 non-coding 
CPAT coding probability 3.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JPH1-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JPH1-3:2
4.0 lnc-JPH1-3:2
4.1 lnc-JPH1-3:2
5.0 lnc-JPH1-3:2
5.1 lnc-CPA6-109:2
5.2 lnc-JPH1-3:2