Transcript: lnc-KATNA1-2:2

Basic information

LNCipedia transcript ID: lnc-KATNA1-2:2 
LNCipedia gene ID: lnc-KATNA1-2
Location (hg19): chr6:149896601-149897260
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 660 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: NONHSAT115503; ENST00000435273.2
Alternative gene names: ENSG00000237502.2; RP1-12G14.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -119.1907 non-coding 
CPAT coding probability 2.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KATNA1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KATNA1-2:2
4.0 lnc-KATNA1-2:2
4.1 lnc-KATNA1-2:2
5.0 lnc-KATNA1-2:2
5.1 lnc-RAET1G-11:3
5.2 lnc-KATNA1-2:2