Transcript: lnc-KBTBD8-1:3

Basic information

LNCipedia transcript ID: lnc-KBTBD8-1:3 
LNCipedia gene ID: lnc-KBTBD8-1
Ensembl Gene ID: ENSG00000241884
Ensembl Transcript ID: ENST00000498247
Location (hg19): chr3:67353303-67355329
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT090317; ENST00000498247.2
Alternative gene names: ENSG00000241884.2; RP11-85I21.1; AC114401.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.2665 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KBTBD8-1:3 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KBTBD8-1:3
4.0 lnc-KBTBD8-1:3
4.1 lnc-KBTBD8-1:3
5.0 lnc-KBTBD8-1:3
5.1 lnc-KBTBD8-1:3
5.2 lnc-KBTBD8-1:3