Transcript: lnc-KCNB2-12:2

Basic information

LNCipedia transcript ID: lnc-KCNB2-12:2 
LNCipedia gene ID: lnc-KCNB2-12
Ensembl Gene ID: ENSG00000254277
Ensembl Transcript ID: ENST00000519840
Location (hg19): chr8:72587535-72615021
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 808 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519840; ENST00000519840.1; RP11-1144P22.1-002; OTTHUMT00000378971.1
Alternative gene names: ENSG00000254277; RP11-1144P22.1; ENSG00000254277.1; OTTHUMG00000164487.1; AC009446.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.6563 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNB2-12:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-383H13.1.1-2:1
3.1 lnc-RP11-383H13.1.1-2:1
4.0 lnc-RP11-383H13.1.1-2:1
4.1 lnc-RP11-383H13.1.1-2:1
5.0 lnc-RP11-383H13.1.1-2:1
5.1 lnc-SULF1-16:2
5.2 lnc-KCNB2-12:2