Transcript: lnc-KCNB2-8:1

Basic information

LNCipedia transcript ID: lnc-KCNB2-8:1 
LNCipedia gene ID: lnc-KCNB2-8
Ensembl Gene ID: ENSG00000253317
Ensembl Transcript ID: ENST00000523602
Location (hg19): chr8:73108569-73114504
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 798 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523602; ENST00000523602.1; RP11-142A23.1-001; OTTHUMT00000378871.1; NONHSAT127214
Alternative gene names: ENSG00000253317; RP11-142A23.1; ENSG00000253317.1; OTTHUMG00000164458.1; AC078906.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.206 non-coding 
CPAT coding probability 9.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNB2-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-383H13.1.1-1:1
3.1 lnc-RP11-383H13.1.1-1:1
4.0 lnc-RP11-383H13.1.1-1:1
4.1 lnc-RP11-383H13.1.1-1:1
5.0 lnc-RP11-383H13.1.1-1:1
5.1 lnc-SULF1-21:1
5.2 lnc-KCNB2-8:1