Transcript: lnc-KCNH1-1:8

Basic information

LNCipedia transcript ID: lnc-KCNH1-1:8 
LNCipedia gene ID: lnc-KCNH1-1
Location (hg19): chr1:210463515-210465750
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 382 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT009255; FPKM1_group_2220_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.5388 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNH1-1:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf133-1:7
4.0 lnc-C1orf133-1:7
4.1 lnc-C1orf133-1:7
5.0 lnc-C1orf133-1:7
5.1 lnc-IRF6-13:7
5.2 lnc-KCNH1-1:8