Transcript: lnc-KCNH5-3:1

Basic information

LNCipedia transcript ID: lnc-KCNH5-3:1 
LNCipedia gene ID: lnc-KCNH5-3
Ensembl Gene ID: ENSG00000258903
Ensembl Transcript ID: ENST00000554252
Location (hg19): chr14:62570096-62583893
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 737 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554252; ENST00000554252.1; RP11-355I22.2-001; OTTHUMT00000411702.1; NONHSAT037285
Alternative gene names: ENSG00000258903; RP11-355I22.2; ENSG00000258903.1; OTTHUMG00000171107.1; AL390816.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -177.145 non-coding 
CPAT coding probability 1.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNH5-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNH5-3:1
3.1 lnc-KCNH5-3:1
4.0 lnc-KCNH5-3:1
4.1 lnc-KCNH5-3:1
5.0 lnc-KCNH5-3:1
5.1 lnc-DHRS7-22:1
5.2 lnc-KCNH5-3:1