Transcript: lnc-KCNJ15-3:4

Basic information

LNCipedia transcript ID: lnc-KCNJ15-3:4 
LNCipedia gene ID: lnc-KCNJ15-3
Location (hg19): chr21:39875742-39894303
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 17597 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000056050.1|ENCT00000271447.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.4604 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNJ15-3:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-KCNJ15-3:4
5.0 lnc-KCNJ15-3:4
5.1 lnc-SIM2-52:4
5.2 lnc-KCNJ15-3:4